Brain Researcher
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Studio notebook preview
Preview of a notebook-style Studio: execution stays in the main stream, and the right rail stays focused on the selected artifact.
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Notebook-style Studio preview
Main execution stays in the notebook stream. The right rail is only for focused viewing.
User request

Natural-language intent drives the run

Run resting-state connectivity on ds000114, use a Schaefer atlas, summarize the strongest network effects, and show me the QC artifacts inline.
Agent plan

The agent translates chat into an executable workflow

I found a mounted BIDS dataset, selected a rest-connectome workflow, and prepared a five-step run with QC artifacts and a compact report.
  • Resolve dataset mount and version from the current thread context.
  • Pick a workflow that can emit both connectivity outputs and QC previews.
  • Prepare a runnable checkpoint instead of asking the user to fill a side form.
  • Keep edits in chat so the next turn can mutate the same plan and rerun.
Plan checkpoint

Plan stays a compact approval cell

Plan checkpoint
This cell is the approval surface. The user reviews what the agent prepared, not a separate planner UI.
Blocked
Dataset
ds000114 · v1.0.1
BIDS · 20 subjects · mounted
Ready
Workflow
Rest connectome
Schaefer-400 · correlation · ICA-AROMA
Ready
Execution shape
5 notebook steps prepared
Preprocess → extract timeseries → compute connectome → QC → summarize artifacts
Info
Needs attention
Missing workflow task selection
The agent still needs a final rest-task interpretation before the run can start.
Verification is partial
Mount access was confirmed from cached source metadata rather than a fresh probe.
Estimated runtime: ~18 min
Execution trace

Step progress belongs in the notebook stream

Dataset mount resolved
Agent matched the prompt to ds000114 and found a mounted BIDS layout with 20 subjects.
Complete
Workflow mapped from intent
Rest-connectome pipeline selected with Schaefer atlas and correlation edges.
Complete
Run checkpoint waiting on one missing input
The notebook is paused until the chat thread or advanced editor resolves the missing task.
Running
Artifact viewer ready
QC plot, regional summary table, and run report are prewired into the right inspector.
Waiting
Results

Artifacts appear inline and open in the inspector

Artifacts appear inline as soon as they are emitted. Selecting one pins it in the right inspector instead of changing tabs.
Follow-up

Edits return to chat, not to a side form

Follow-up edits should happen here in chat. The agent updates the notebook and refreshes the checkpoint cell.
Increase the font size on the QC plot, switch to Schaefer-200, and rerun with global signal regression.
The agent would treat this as the next notebook turn and update the checkpoint cell.
Focused inspector
The right rail stays dedicated to the currently selected artifact or visualization.
Inspector

Motion QC overview

chart
Framewise displacement stays low for most subjects, with one moderate outlier.
Chart preview
Q1
Q2
Q3
Q4
What the agent surfaced
  • Median FD stays below 0.2 mm for the first three quartiles.
  • One subject crosses the review threshold and would be surfaced back in chat.
  • This card is just a focused preview; the result still belongs to the notebook stream.
Other open artifacts